Yes, teams may put a "plug" or "cap" on the opening of the internal beaker. Anything put in or around the beaker cannot physically modify the beaker nor the water in the beaker. The required hole for the probe must be at least 1.5 cm in diameter in any plug or cap. The device does not need to be all one physically attached unit.
According to this FAQ, you can in fact place a cap into or on the opening of the beaker. Sjwon3789, you are correct, it should be legal as long as there is a 1.5 cm hole for the probe. Devices with full lids are against the rules. I'm enjoying the irony in Forever's comment about not knowing the rules yet






