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Re: Protein Modeling C
Posted: February 11th, 2019, 7:10 am
by eagerlearner102
For the on site build, does every regional choose their own special sequence to model the protein or is it the same across the entire nation? I am asking this question because I saw the onsite build instructions from the MIT invitational.
Also, how do you really practice for the on site build considering the fact that it is now 40%?
Re: Protein Modeling C
Posted: February 11th, 2019, 2:58 pm
by banilmd
eagerlearner102 wrote:For the on site build, does every regional choose their own special sequence to model the protein or is it the same across the entire nation? I am asking this question because I saw the onsite build instructions from the MIT invitational.
Also, how do you really practice for the on site build considering the fact that it is now 40%?
Me and my partner have just went along separating the protein that’s usually given to us for onsite into roughly 100 residue sections.
We just go along and practice timed building of significant structures.
Re: Protein Modeling C
Posted: February 11th, 2019, 3:02 pm
by platypusomelette
Just a theory but it looks like the turns are the parts between beta pleats specifically
Re: Protein Modeling C
Posted: February 11th, 2019, 9:37 pm
by primitivepolonium
eagerlearner102 wrote:For the on site build, does every regional choose their own special sequence to model the protein or is it the same across the entire nation? I am asking this question because I saw the onsite build instructions from the MIT invitational.
Also, how do you really practice for the on site build considering the fact that it is now 40%?
Exams (written, prebuild rubric, onsite) are standardized across the board. Unless things have changed from previous years, the onsite should be the same for every regionals and every states tournament.
Re: Protein Modeling C
Posted: February 12th, 2019, 9:18 am
by platypusomelette
eagerlearner102 wrote:For the on site build, does every regional choose their own special sequence to model the protein or is it the same across the entire nation? I am asking this question because I saw the onsite build instructions from the MIT invitational.
Also, how do you really practice for the on site build considering the fact that it is now 40%?
The MIT rubric was different from my regionals one though so invites are not standardized.
Re: Protein Modeling C
Posted: February 12th, 2019, 9:22 am
by shivanirao21
banilmd wrote:eagerlearner102 wrote:For the on site build, does every regional choose their own special sequence to model the protein or is it the same across the entire nation? I am asking this question because I saw the onsite build instructions from the MIT invitational.
Also, how do you really practice for the on site build considering the fact that it is now 40%?
Me and my partner have just went along separating the protein that’s usually given to us for onsite into roughly 100 residue sections.
We just go along and practice timed building of significant structures.
How did you figure out which amino acid sidechains were significant to the protein during the onsite build?
Re: Protein Modeling C
Posted: February 12th, 2019, 9:26 am
by CookiePie1
shivanirao21 wrote:banilmd wrote:eagerlearner102 wrote:For the on site build, does every regional choose their own special sequence to model the protein or is it the same across the entire nation? I am asking this question because I saw the onsite build instructions from the MIT invitational.
Also, how do you really practice for the on site build considering the fact that it is now 40%?
Me and my partner have just went along separating the protein that’s usually given to us for onsite into roughly 100 residue sections.
We just go along and practice timed building of significant structures.
How did you figure out which amino acid sidechains were significant to the protein during the onsite build?
They will usually tell you. It's just up to you to put it in the right spot and orient it correctly.
Re: Protein Modeling C
Posted: February 12th, 2019, 4:51 pm
by eagerlearner102
So as of now, I can use the MIT invitational as practice correct? Also, for the prebuild, did any of you attach DNA or other nucleic acids?
Re: Protein Modeling C
Posted: February 12th, 2019, 5:09 pm
by olhs4n6
eagerlearner102 wrote:So as of now, I can use the MIT invitational as practice correct? Also, for the prebuild, did any of you attach DNA or other nucleic acids?
I didn't add DNA, but was curious as to where one would even add it...
Re: Protein Modeling C
Posted: February 12th, 2019, 5:46 pm
by eagerlearner102
Same. I didn't really see how you could add it. All they mention is their interactions with RuvC, CTD, and PAM domain that have residues.